To investigate the growth, physiological and biochemical responses of different genotypes of Betula luminifera under low nitrogen stress, we conducted a split-plot experiment using seedlings of three genotypes: G49-3, G50-1, and U3. There B. luminifera plants were grown in Hoagland nutrient solution under control (CK, 15 mmol·L-1 $NO_{3}^{-}$) and low nitrogen (LN, 0.03 mmol·L-1 $NO_{3}^{-}$) treatments. After 21 days of LN treatment, the chlorophyll content, plant height, shoot dry weight, shoot N content, and N content were significantly reduced in all three B. luminifera genotypes, with the greatest decrease in G49-3 and the lowest decrease in G50-1. Root-shoot ratio, total root length, total root surface area, and root average diameter were higher under LN treatment. Peroxidase (POD), superoxide (SOD), and nitrate reductase (NR) levels were lower in leaves with LN treatment; G50-1 was the genotype with the least influences. Quantitative reverse-transcription polymerase chain reaction (RT-qPCR), revealed that NRT1.1 and NRT1.2 were down-regulated in both leaves and roots of all three genotypes under LN. In contrast, NRT2.1 was up-regulated in roots, suggesting that NRT2.1 plays a major role in nitrate transfer in B. luminifera roots under LN stress. Comprehensive membership function analysis showed that the average value of G50-1 (0.73) was higher than those of U3 (0.44) and G49-3 (0.34), indicating that among these genotypes, G50-1 is the most tolerant to LN stress and G49-3 the most sensitive. These results reveal the physiological mechanism of B. luminifera adapting to low nitrogen environment. It also suggest that it is feasible to select and breed improved varieties of B. luminifera with high LN tolerance and N efficiency using traditional genetic improvement strategies.