YUAN Xinjie, FANG Rong, ZHOU Kunhua, LEI Gang, HUANG Yueqin, CHEN Xuejun
In order to explore the associated loci and elite alleles for important agronomic traits of pepper, including plant height, first flower node, fruit weight, fruit length, fruit diameter, fruit shape index and pericarp thickness, the genotyping data of 58 SSR markers which distributed on 12 chromosomes in 194 Capsicum annuum core collections were used to detect association with 7 phenotypic traits by using GLM (general linear model, GLM) and MLM(mixed linear model, MLM) methods. The results showed that 20 associated SSR loci were detected by GLM methods, which explain 2.09%~21.91% of the phenotypic variance; 17 associated SSR loci were detected by MLM methods, which explain 2.07%~7.24% of the phenotypic variance; 12 loci were detected by both methods; elite alleles such as TC7268Sa, CAMS-327a, HpmsE132a, ge35-141pmH0135Ca, CAMS-454c and Hpms2-24a were explored based on the phenotypic effect of each associated locus; 28 typical excellent carrier materials, including germplasm B003, B010, B015, B020, B022, B042, B048, B052, B097, B111, B134, B138, B166, B178, B351, B352, C005, C014, V06C0007, V06C0295, V06C1082, V06C1088, V06C1187, V06C1321, V06C1600, V06C1707, V06C1719 and V06C1898 were selected based on these elite alleles. The results in this study provided theoretical guidance and valuable natural resources for the excavation of excellent genes, marker-assisted selection breeding and pyramiding breeding for related agronomic traits in pepper.