‘Exploration and Quality Control of Medicinal Plant Germplasms’ Column Ⅲ
ZHENG Feixiong, XU Zhangting, DENG Xiaoji, SHANG Chaoyang, LIU Jun, WU Tiquan, SHEN Xiaoxia, YU Zhenming
MYB is one of the most abundant and functionally diverse transcription factors in fungi, representing a highly conserved family of transcription factors in eukaryotes. To identify the MYB family in Ganoderma lingzhi and the potential role in the metabolism of pharmacodynamic ingredients, based on the whole genome of Ganoderma lingzhi, this study identified members of the MYB gene family in G. lingzhi using a hidden Markov model. Bioinformatics methods were employed to analyze their chromosomal localization, collinearity, gene structure, phylogenetic tree, and cis-regulatory elements. Additionally, qRT-PCR was used to examine the expression levels of G. lingzhi MYB under MeJA and in different tissues. The results revealed that G. lingzhi harbors 9 MYB members (GlMYB1-GlMYB9), which were classified into 4 subfamilies and distributed across 9 different chromosomes. Interspecies collinearity analysis demonstrated the conservation of G. lingzhi within the Polyporaceae family, while phylogenetic tree and conserved motif analyses indicated the evolutionary conservation of G. lingzhi MYB. Promoter cis-element analysis showed that G. lingzhi MYB contains numerous light responsive elements, hormone responsive elements, and stress responsive elements, particularly jasmonic acid responsive elements. The results of qRT-PCR confirmed that the expression levels of GlMYB varied significantly across different developmental stages, with GlMYB9 showing high expression in mycelium, young fruiting bodies, and mature fruiting bodies. Under MeJA treatment, the expression of most GlMYB members was upregulated, except for GlMYB1, GlMYB5, and GlMYB7. Notably, GlMYB4 and GlMYB9 exhibited the most pronounced upregulation. These findings identified key candidate genes that may play crucial roles in G. lingzhi development and stress responses and provided an important theoretical foundation for further exploration of the physiological mechanisms underlying G. lingzhi growth and development, as well as its responses to hormones and abiotic stress, and offer insights into the genetic regulation of secondary metabolism in G. lingzhi.