Induced Mutations for Plant Breeding · Agricultural Biotechnology
ZOU Guihua, DING Yanqing, XU Jianxia, CAO Ning, CHEN Heyun, LIU Heqin, ZHENG Xueqiang, ZHANG Liyi
Thousand grain weight (TGW) is one of the three important components of crop yield. Increasing grain weight is an effective way in the improvement of crop yield. In this study, to elucidate the genetic machanism of 1000-grain weigth an association mapping panel consisting of 242 sorghum landraces/cultivars collected mainly from 16 sorghum planting provinces across China was genotyped using whole-genome re-sequencing method. TGW of each accession was phenotyped across seven environments over three years from 2018 to 2020. Multi-locus association analyses based on 2 015 850 SNPs were carried out using mrMLM 4.0 R package which comprises the mrMLM, FASTmrMLM, FASTmrEMMA, ISIS EM-BLASSO, pLARmEB, and pKWmEB models. Results showed that TGW displayed a continuous and normal distribution as a typical quantitative trait. The variations of TGW were ranged from 10~50 g under seven environments. A total of 323 quantitative trait nucleotides (QTNs) for TGW were detected using six models. The phenotypic variation explained by individual QTN varied from 0.4% to 26.6%. Six multi-locus models revealed differential QTN numbers associated with TGW. The maximum number of associated QTNs was observed in FASTmrMLM model followed by pKWmEB model, pLARmEB model, mrMLM model, ISIS EM-BLASSO model, and FASTmrEMMA model. After merging the same QTNs, 96 consistently reliable QTNs were detected using multi-locus GWAS methods and/or at least two seasons, which were distributed unevenly on 10 chromosomes. Among them, 4 QTNs overlapped with previously reported QTLs. Besides, 5 candidate orthologous to documented rice grain weight genes, like GW7/GL7, BG2, OsARF4, RSR1, TGW6, were found to be located within four QTNs. These results help us to understand the genetic architecture of grain size and pave the way for exploration of underlying molecular mechanisms and molecular design breeding of this trait in sorghum breeding practices.